Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS24775 | Not Available | Positive | 3992625 - 3992789 | 5942.2 |
| gatb/yqey domain-containing protein | BJD13_RS19465 | Not Available | Negative | 3992975 - 3993421 | 15917.5 |
| 30s ribosomal protein s21 | BJD13_RS19470 | Not Available | Negative | 3993685 - 3993900 | 8614.48 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | BJD13_RS19475 | Not Available | Positive | 3994179 - 3995240 | 36883.4 |
| dihydroneopterin aldolase | BJD13_RS19480 | Not Available | Positive | 3995325 - 3995681 | 13353.1 |
| glycoside hydrolase family 3 n-terminal domain-containing protein | BJD13_RS19485 | Not Available | Positive | 3995910 - 3998081 | 77588.5 |
| pqq-dependent sugar dehydrogenase | BJD13_RS19490 | Not Available | Negative | 3998253 - 3999431 | 41772.7 |
| nfed family protein | BJD13_RS19495 | Not Available | Positive | 3999614 - 4000047 | 16067.7 |
| hypothetical protein | BJD13_RS19500 | Not Available | Negative | 4000102 - 4000434 | 12887.4 |
| hypothetical protein | BJD13_RS19505 | Not Available | Negative | 4000609 - 4001106 | 16755.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
