Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit 3 | BJD13_RS19410 | Not Available | Positive | 3981828 - 3982703 | 32508.8 |
| twin transmembrane helix small protein | BJD13_RS19415 | Not Available | Negative | 3982797 - 3983015 | 7980.14 |
| surf1 family protein | BJD13_RS19420 | Not Available | Positive | 3983076 - 3983798 | 25945.8 |
| hypothetical protein | BJD13_RS19425 | Not Available | Positive | 3983826 - 3984401 | 20827.7 |
| cox15/ctaa family protein | BJD13_RS19430 | Not Available | Positive | 3984412 - 3985575 | 42335.8 |
| heme o synthase | BJD13_RS19435 | Not Available | Positive | 3985578 - 3986474 | 32717.3 |
| thioredoxin family protein | BJD13_RS19440 | Not Available | Negative | 3986709 - 3988289 | 56470.8 |
| bile acid:sodium symporter family protein | BJD13_RS19445 | Not Available | Negative | 3988460 - 3989506 | 37245.0 |
| dna primase | BJD13_RS19450 | Not Available | Negative | 3989616 - 3991364 | 65357.0 |
| yihy/virulence factor brkb family protein | BJD13_RS19455 | Not Available | Negative | 3991446 - 3992489 | 37444.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
