Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fimv family protein | BJD13_RS03030 | Not Available | Positive | 313594 - 315522 | 66460.9 |
| voc family protein | BJD13_RS03035 | Not Available | Positive | 315519 - 315926 | 14693.0 |
| trna pseudouridine(38-40) synthase trua | BJD13_RS03040 | Not Available | Positive | 316089 - 316862 | 28364.8 |
| phosphoribosylanthranilate isomerase | BJD13_RS03045 | Not Available | Positive | 316859 - 317527 | 24135.8 |
| lysr family transcriptional regulator | BJD13_RS03050 | Not Available | Negative | 317719 - 318645 | 32618.2 |
| tryptophan synthase subunit beta | BJD13_RS03055 | Not Available | Positive | 318751 - 319968 | 43195.3 |
| hypothetical protein | BJD13_RS03060 | Not Available | Positive | 320011 - 320391 | 13676.1 |
| tryptophan synthase subunit alpha | BJD13_RS03065 | Not Available | Positive | 320435 - 321241 | 28068.6 |
| acetyl-coa carboxylase, carboxyltransferase subunit beta | BJD13_RS03070 | Not Available | Positive | 321482 - 322369 | 31965.5 |
| phosphoglucosamine mutase | BJD13_RS03075 | Not Available | Positive | 322366 - 323715 | 47165.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
