Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ala | Not Available | Not Available | Positive | 3970138 - 3970213 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 3970232 - 3970308 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 3970536 - 3973416 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 3973544 - 3973658 | Not Available |
| bifunctional proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase puta | BJD13_RS19380 | Not Available | Negative | 3974481 - 3977681 | 114571.0 |
| duf2244 domain-containing protein | BJD13_RS19385 | Not Available | Positive | 3977947 - 3978423 | 17309.2 |
| cytochrome c oxidase subunit ii | BJD13_RS19390 | Not Available | Positive | 3978440 - 3979399 | 34725.8 |
| cytochrome c oxidase subunit i | BJD13_RS19395 | Not Available | Positive | 3979438 - 3981042 | 59421.7 |
| hypothetical protein | BJD13_RS19400 | Not Available | Positive | 3981023 - 3981196 | 6029.39 |
| cytochrome c oxidase assembly protein | BJD13_RS19405 | Not Available | Positive | 3981193 - 3981789 | 21064.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
