Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| para family protein | BJD13_RS19310 | Not Available | Negative | 3958318 - 3959115 | 28530.4 |
| hypothetical protein | BJD13_RS19315 | Not Available | Negative | 3959230 - 3959880 | 23637.1 |
| orotate phosphoribosyltransferase | BJD13_RS19320 | Not Available | Negative | 3959930 - 3960589 | 22845.3 |
| exodeoxyribonuclease iii | BJD13_RS19325 | Not Available | Positive | 3960716 - 3961516 | 30395.4 |
| ampg family muropeptide mfs transporter | BJD13_RS19330 | Not Available | Positive | 3961836 - 3963131 | 46182.9 |
| hypothetical protein | BJD13_RS19335 | Not Available | Positive | 3963190 - 3963417 | 8229.92 |
| anhydro-n-acetylmuramic acid kinase | BJD13_RS19340 | Not Available | Negative | 3963459 - 3964592 | 39442.3 |
| m23 family metallopeptidase | BJD13_RS19345 | Not Available | Negative | 3964975 - 3966393 | 51710.2 |
| tyrosine--trna ligase | BJD13_RS19350 | Not Available | Positive | 3966564 - 3967775 | 44435.7 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 3968496 - 3970042 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
