Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radc family protein | BJD13_RS19260 | Not Available | Negative | 3948526 - 3949239 | 26236.5 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | BJD13_RS19265 | Not Available | Positive | 3949300 - 3950574 | 44022.8 |
| dutp diphosphatase | BJD13_RS19270 | Not Available | Positive | 3950571 - 3951038 | 16354.9 |
| phosphomannomutase/phosphoglucomutase | BJD13_RS24770 | Not Available | Positive | 3951052 - 3953397 | 82860.0 |
| hypothetical protein | BJD13_RS19280 | Not Available | Negative | 3953504 - 3954076 | 20943.2 |
| lipid-a-disaccharide synthase n-terminal domain-containing protein | BJD13_RS19285 | Not Available | Negative | 3954456 - 3954797 | 12994.9 |
| glycosyltransferase family 2 protein | BJD13_RS19290 | Not Available | Negative | 3954797 - 3955519 | 27026.4 |
| sdr family nad(p)-dependent oxidoreductase | BJD13_RS19295 | Not Available | Negative | 3955877 - 3956842 | 35325.1 |
| helix-hairpin-helix domain-containing protein | BJD13_RS19300 | Not Available | Negative | 3957047 - 3957355 | 11475.1 |
| parb/repb/spo0j family partition protein | BJD13_RS19305 | Not Available | Negative | 3957389 - 3958318 | 33376.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
