Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eal domain-containing protein | BJD13_RS19160 | Not Available | Negative | 3922273 - 3923835 | 56062.2 |
| hypothetical protein | BJD13_RS19165 | Not Available | Positive | 3924215 - 3924391 | 6178.17 |
| lipocalin family protein | BJD13_RS19170 | Not Available | Negative | 3924615 - 3925124 | 19261.6 |
| yifb family mg chelatase-like aaa atpase | BJD13_RS19175 | Not Available | Negative | 3925470 - 3926990 | 53862.8 |
| ubiquinone biosynthesis accessory factor ubik | BJD13_RS19180 | Not Available | Negative | 3927006 - 3927284 | 10105.2 |
| p-ii family nitrogen regulator | BJD13_RS19185 | Not Available | Positive | 3927438 - 3927812 | 13257.3 |
| beta-n-acetylglucosaminidase domain-containing protein | BJD13_RS19195 | Not Available | Positive | 3928289 - 3930274 | 70847.4 |
| rio1 family regulatory kinase/atpase | BJD13_RS19200 | Not Available | Negative | 3930478 - 3931134 | 24691.2 |
| hypothetical protein | BJD13_RS19205 | Not Available | Positive | 3931680 - 3932498 | 28538.4 |
| ph domain-containing protein | BJD13_RS19210 | Not Available | Positive | 3932684 - 3933295 | 22519.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
