Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3182 family protein | BJD13_RS19110 | Not Available | Positive | 3911964 - 3913058 | 38688.6 |
| alpha/beta hydrolase family protein | BJD13_RS19115 | Not Available | Positive | 3913058 - 3913927 | 31422.6 |
| hypothetical protein | BJD13_RS19120 | Not Available | Negative | 3914189 - 3914989 | 29814.8 |
| rtcb family protein | BJD13_RS19125 | Not Available | Negative | 3915195 - 3916418 | 44482.5 |
| slipin family protein | BJD13_RS19130 | Not Available | Negative | 3916473 - 3917597 | 41289.3 |
| Trna-thr | Not Available | Not Available | Positive | 3917951 - 3918024 | Not Available |
| Trna-pseudo | Not Available | Not Available | Positive | 3918022 - 3918088 | Not Available |
| hth-type transcriptional repressor fabr | BJD13_RS19145 | Not Available | Negative | 3919261 - 3919908 | 23534.5 |
| ferredoxin reductase | BJD13_RS19150 | Not Available | Positive | 3920001 - 3921077 | 38789.1 |
| fatty acid desaturase family protein | BJD13_RS19155 | Not Available | Positive | 3921087 - 3922208 | 42330.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
