Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| catalase family peroxidase | BJD13_RS19015 | Not Available | Negative | 3894882 - 3895973 | 39075.1 |
| rna polymerase sigma factor | BJD13_RS19020 | Not Available | Positive | 3896134 - 3896649 | 19100.0 |
| anti-sigma factor family protein | BJD13_RS19025 | Not Available | Positive | 3896646 - 3897398 | 26764.1 |
| leucyl aminopeptidase family protein | BJD13_RS19030 | Not Available | Negative | 3897454 - 3898824 | 48856.3 |
| had family hydrolase | BJD13_RS19035 | Not Available | Negative | 3898866 - 3899603 | 27188.4 |
| ai-2e family transporter | BJD13_RS19040 | Not Available | Negative | 3899704 - 3900810 | 40115.9 |
| hypothetical protein | BJD13_RS19045 | Not Available | Negative | 3901398 - 3901781 | 13879.6 |
| phage holin family protein | BJD13_RS19050 | Not Available | Negative | 3901778 - 3902263 | 16748.9 |
| hypothetical protein | BJD13_RS19055 | Not Available | Negative | 3902267 - 3902629 | 12171.3 |
| do family serine endopeptidase | BJD13_RS19060 | Not Available | Negative | 3902746 - 3904182 | 49926.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
