Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama family transporter rard | BJD13_RS18965 | Not Available | Positive | 3883699 - 3884607 | 32528.6 |
| alpha/beta hydrolase family protein | BJD13_RS18970 | Not Available | Negative | 3884684 - 3885799 | 39753.5 |
| abc transporter permease | BJD13_RS18975 | Not Available | Negative | 3885967 - 3887292 | 46398.1 |
| abc transporter permease | BJD13_RS18980 | Not Available | Negative | 3887300 - 3888460 | 42221.7 |
| abc transporter atp-binding protein | BJD13_RS18985 | Not Available | Negative | 3888473 - 3889162 | 25143.2 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS18990 | Not Available | Negative | 3889539 - 3890783 | 43792.7 |
| sensor histidine kinase | BJD13_RS18995 | Not Available | Positive | 3891244 - 3892419 | 42968.9 |
| response regulator transcription factor | BJD13_RS19000 | Not Available | Positive | 3892504 - 3893106 | 21904.6 |
| thua domain-containing protein | BJD13_RS19005 | Not Available | Positive | 3893330 - 3894118 | 29812.3 |
| cytochrome b | BJD13_RS19010 | Not Available | Negative | 3894343 - 3894885 | 20067.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
