Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| roadblock/lc7 domain-containing protein | BJD13_RS18910 | Not Available | Negative | 3874732 - 3875184 | 16124.4 |
| arginase | BJD13_RS18915 | Not Available | Positive | 3875505 - 3876428 | 33140.9 |
| entericidin a/b family lipoprotein | BJD13_RS18920 | Not Available | Positive | 3876535 - 3876687 | 5137.4 |
| entericidin a/b family lipoprotein | BJD13_RS18925 | Not Available | Positive | 3876762 - 3876896 | 4459.62 |
| csbd family protein | BJD13_RS18930 | Not Available | Positive | 3877124 - 3877333 | 7982.15 |
| tryptophan--trna ligase | BJD13_RS18935 | Not Available | Positive | 3877500 - 3878789 | 46771.6 |
| mbl fold metallo-hydrolase | BJD13_RS18940 | Not Available | Positive | 3878918 - 3879862 | 33920.8 |
| m28 family metallopeptidase | BJD13_RS18945 | Not Available | Positive | 3880225 - 3881916 | 60435.5 |
| rap1a/tai family immunity protein | BJD13_RS18955 | Not Available | Negative | 3882253 - 3882726 | 16272.4 |
| drug/metabolite exporter yeda | BJD13_RS18960 | Not Available | Positive | 3882758 - 3883702 | 32518.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
