Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4013 domain-containing protein | BJD13_RS02980 | Not Available | Negative | 301007 - 302281 | 46623.7 |
| gdp-mannose pyrophosphatase nudk | BJD13_RS02985 | Not Available | Positive | 302634 - 303254 | 22960.4 |
| helicase hera-like domain-containing protein | BJD13_RS02990 | Not Available | Negative | 303305 - 304810 | 53606.6 |
| transglycosylase slt domain-containing protein | BJD13_RS02995 | Not Available | Positive | 305103 - 306686 | 57051.1 |
| archaetidylserine decarboxylase | BJD13_RS03000 | Not Available | Negative | 307098 - 307940 | 30670.0 |
| sco family protein | BJD13_RS03005 | Not Available | Negative | 307937 - 308587 | 23323.2 |
| 50s ribosomal protein l3 n(5)-glutamine methyltransferase | BJD13_RS03010 | Not Available | Positive | 308668 - 309594 | 33711.0 |
| chorismate synthase | BJD13_RS03015 | Not Available | Positive | 309605 - 310708 | 39112.4 |
| 2-hydroxyacid dehydrogenase | BJD13_RS03020 | Not Available | Positive | 310701 - 311774 | 37515.0 |
| aspartate-semialdehyde dehydrogenase | BJD13_RS03025 | Not Available | Positive | 311858 - 312883 | 36758.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
