Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf885 domain-containing protein | BJD13_RS18740 | Not Available | Positive | 3842997 - 3844787 | 65965.2 |
| hypothetical protein | BJD13_RS18745 | Not Available | Negative | 3844887 - 3845357 | 15313.3 |
| hypothetical protein | BJD13_RS18750 | Not Available | Positive | 3845581 - 3845823 | 8373.93 |
| porphobilinogen synthase | BJD13_RS18755 | Not Available | Positive | 3846048 - 3847040 | 36516.8 |
| dna/rna non-specific endonuclease | BJD13_RS18760 | Not Available | Negative | 3847415 - 3848167 | 26281.7 |
| pepsy domain-containing protein | BJD13_RS18765 | Not Available | Positive | 3848397 - 3850931 | 92835.1 |
| tolb family protein | BJD13_RS18770 | Not Available | Negative | 3851396 - 3852277 | 30515.9 |
| shikimate dehydrogenase | BJD13_RS18775 | Not Available | Positive | 3852342 - 3853193 | 29828.3 |
| hypothetical protein | BJD13_RS18780 | Not Available | Positive | 3853183 - 3853557 | 13019.7 |
| hypothetical protein | BJD13_RS18785 | Not Available | Positive | 3853554 - 3853790 | 8284.58 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
