Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydropantoate 2-reductase | BJD13_RS18640 | Not Available | Negative | 3819103 - 3820047 | 33104.8 |
| abc transporter permease | BJD13_RS18645 | Not Available | Negative | 3820047 - 3820859 | 29515.9 |
| abc transporter atp-binding protein | BJD13_RS18650 | Not Available | Negative | 3820856 - 3821851 | 36078.0 |
| ferredoxin--nadp reductase | BJD13_RS18655 | Not Available | Positive | 3821888 - 3822715 | 30177.9 |
| cdf family co(ii)/ni(ii) efflux transporter dmef | BJD13_RS18660 | Not Available | Negative | 3822801 - 3823802 | 35867.4 |
| metal/formaldehyde-sensitive transcriptional repressor | BJD13_RS18665 | Not Available | Positive | 3823867 - 3824139 | 9856.06 |
| gh39 family glycosyl hydrolase | BJD13_RS18670 | Not Available | Negative | 3824258 - 3825820 | 58261.3 |
| hypothetical protein | BJD13_RS18675 | Not Available | Positive | 3826284 - 3826871 | 21465.2 |
| helix-turn-helix transcriptional regulator | BJD13_RS18680 | Not Available | Positive | 3826868 - 3827068 | 7509.84 |
| alpha/beta hydrolase | BJD13_RS18685 | Not Available | Positive | 3827123 - 3828724 | 55912.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
