Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| magnesium transporter | BJD13_RS18580 | Not Available | Positive | 3806199 - 3807566 | 49549.6 |
| bifunctional acetate--coa ligase family protein/gnat family n-acetyltransferase | BJD13_RS18585 | Not Available | Positive | 3807682 - 3810390 | 96619.9 |
| duf475 domain-containing protein | BJD13_RS18590 | Not Available | Positive | 3810496 - 3811539 | 37886.4 |
| ribonucleoside-diphosphate reductase subunit alpha | BJD13_RS18600 | Not Available | Positive | 3812142 - 3814640 | 94181.3 |
| ribonucleotide-diphosphate reductase subunit beta | BJD13_RS18610 | Not Available | Positive | 3814817 - 3815860 | 39522.6 |
| flavodoxin | BJD13_RS18615 | Not Available | Positive | 3816431 - 3816883 | 16751.1 |
| thioredoxin family protein | BJD13_RS18620 | Not Available | Positive | 3816888 - 3817214 | 11848.3 |
| duf3592 domain-containing protein | BJD13_RS18625 | Not Available | Positive | 3817252 - 3817704 | 17112.8 |
| acyl-coa thioesterase | BJD13_RS18630 | Not Available | Positive | 3817742 - 3818143 | 14235.3 |
| hypothetical protein | BJD13_RS18635 | Not Available | Negative | 3818291 - 3818806 | 18944.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
