Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pp2c family protein-serine/threonine phosphatase | BJD13_RS18365 | Not Available | Positive | 3750780 - 3751496 | 25927.0 |
| bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein | BJD13_RS18370 | Not Available | Positive | 3751501 - 3755202 | 131391.0 |
| hypothetical protein | BJD13_RS18375 | Not Available | Positive | 3755199 - 3755660 | 16266.8 |
| shlb/fhac/hecb family hemolysin secretion/activation protein | BJD13_RS18380 | Not Available | Positive | 3755657 - 3757333 | 60400.4 |
| filamentous hemagglutinin n-terminal domain-containing protein | BJD13_RS18385 | Not Available | Positive | 3757345 - 3765528 | 260653.0 |
| type vi secretion system protein tssa | BJD13_RS18390 | Not Available | Positive | 3765578 - 3766621 | 37661.5 |
| duf2782 domain-containing protein | BJD13_RS18395 | Not Available | Negative | 3766985 - 3767275 | 10512.5 |
| dna polymerase i | BJD13_RS18400 | Not Available | Positive | 3767352 - 3770153 | 100862.0 |
| oxygen-dependent coproporphyrinogen oxidase | BJD13_RS18405 | Not Available | Negative | 3771002 - 3771901 | 34414.2 |
| hypothetical protein | BJD13_RS18415 | Not Available | Negative | 3772319 - 3772888 | 20014.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
