Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | BJD13_RS18315 | Not Available | Positive | 3735864 - 3737195 | 47583.3 |
| type vi secretion system tip protein vgrg | BJD13_RS18320 | Not Available | Positive | 3737345 - 3739312 | 71175.4 |
| duf6931 family protein | BJD13_RS18325 | Not Available | Positive | 3739309 - 3739857 | 18850.5 |
| type vi secretion system-associated fha domain protein tagh | BJD13_RS18330 | Not Available | Positive | 3740177 - 3741508 | 47420.9 |
| lysr family transcriptional regulator | BJD13_RS18335 | Not Available | Negative | 3741567 - 3742448 | 32183.0 |
| aldo/keto reductase family oxidoreductase | BJD13_RS18340 | Not Available | Positive | 3742698 - 3743588 | 31569.8 |
| type vi secretion system baseplate subunit tssk | BJD13_RS18345 | Not Available | Positive | 3744091 - 3745425 | 49056.1 |
| type ivb secretion system protein icmh/dotu | BJD13_RS18350 | Not Available | Positive | 3745407 - 3746684 | 45775.2 |
| type vi secretion system membrane subunit tssm | BJD13_RS18355 | Not Available | Positive | 3746681 - 3750211 | 125993.0 |
| type vi secretion system-associated protein tagf | BJD13_RS18360 | Not Available | Positive | 3750208 - 3750783 | 20321.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
