Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cpbp family intramembrane glutamic endopeptidase | BJD13_RS18255 | Not Available | Positive | 3722082 - 3722741 | 24016.9 |
| hypothetical protein | BJD13_RS18260 | Not Available | Positive | 3722802 - 3723536 | 26849.8 |
| jacalin-like lectin | BJD13_RS18270 | Not Available | Negative | 3724156 - 3725460 | 45872.9 |
| histidine-type phosphatase | BJD13_RS18275 | Not Available | Negative | 3725533 - 3726834 | 45800.9 |
| tonb-dependent receptor | BJD13_RS18280 | Not Available | Negative | 3726938 - 3729829 | 104653.0 |
| fecr family protein | BJD13_RS18290 | Not Available | Negative | 3730291 - 3731367 | 39388.0 |
| rna polymerase sigma factor | BJD13_RS18295 | Not Available | Negative | 3731361 - 3731885 | 19852.8 |
| ecf-type sigma factor ecfk | BJD13_RS18300 | Not Available | Positive | 3732236 - 3732775 | 19895.8 |
| serine/threonine-protein kinase | BJD13_RS18305 | Not Available | Positive | 3732754 - 3735273 | 90119.8 |
| paar domain-containing protein | BJD13_RS18310 | Not Available | Positive | 3735317 - 3735631 | 10214.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
