Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hcp family type vi secretion system effector | BJD13_RS18210 | Not Available | Positive | 3711251 - 3711754 | 17555.5 |
| type vi secretion system accessory protein tagj | BJD13_RS18220 | Not Available | Positive | 3711966 - 3712760 | 28999.4 |
| type vi secretion system baseplate subunit tsse | BJD13_RS18225 | Not Available | Positive | 3712767 - 3713270 | 18659.4 |
| type vi secretion system baseplate subunit tssf | BJD13_RS18230 | Not Available | Positive | 3713275 - 3715158 | 69504.5 |
| type vi secretion system baseplate subunit tssg | BJD13_RS18235 | Not Available | Positive | 3715122 - 3716162 | 38181.7 |
| type vi secretion system atpase tssh | BJD13_RS18240 | Not Available | Positive | 3716219 - 3718981 | 99698.9 |
| lira/mavj family t4ss effector | BJD13_RS18245 | Not Available | Positive | 3719025 - 3719906 | 33932.5 |
| nfed family protein | BJD13_RS25060 | Not Available | Positive | 3720007 - 3720111 | 4021.75 |
| endonuclease/exonuclease/phosphatase family protein | BJD13_RS24760 | Not Available | Positive | 3720422 - 3721177 | 27035.2 |
| duf4124 domain-containing protein | BJD13_RS18250 | Not Available | Positive | 3721641 - 3722030 | 13629.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
