Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | BJD13_RS18105 | Not Available | Positive | 3687487 - 3688758 | 45959.1 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS18110 | Not Available | Positive | 3688941 - 3690212 | 44355.2 |
| efflux rnd transporter permease subunit | BJD13_RS18115 | Not Available | Positive | 3690786 - 3693998 | 114393.0 |
| cation diffusion facilitator family transporter | BJD13_RS18120 | Not Available | Positive | 3693995 - 3694642 | 22316.5 |
| 50s ribosomal protein l28 | BJD13_RS18125 | Not Available | Positive | 3694902 - 3695138 | 9091.99 |
| 50s ribosomal protein l33 | BJD13_RS18130 | Not Available | Positive | 3695152 - 3695319 | 6406.03 |
| amidohydrolase family protein | BJD13_RS18135 | Not Available | Negative | 3695643 - 3696665 | 37831.1 |
| 4-oxalomesaconate tautomerase | BJD13_RS18145 | Not Available | Negative | 3696894 - 3697949 | 36164.4 |
| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase | BJD13_RS18150 | Not Available | Negative | 3697942 - 3698613 | 23790.8 |
| lysr substrate-binding domain-containing protein | BJD13_RS18155 | Not Available | Positive | 3698715 - 3700019 | 47263.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
