Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cation acetate symporter | BJD13_RS18045 | Not Available | Positive | 3675516 - 3677243 | 59746.0 |
| exodeoxyribonuclease iii | BJD13_RS18055 | Not Available | Positive | 3677932 - 3678711 | 29160.5 |
| gfa family protein | BJD13_RS18060 | Not Available | Positive | 3678708 - 3679145 | 16038.2 |
| glsb/yeaq/ymge family stress response membrane protein | BJD13_RS18065 | Not Available | Negative | 3679207 - 3679458 | 8839.44 |
| 4'-phosphopantetheinyl transferase family protein | BJD13_RS18070 | Not Available | Positive | 3679585 - 3680181 | 21989.4 |
| alkaline phosphatase d family protein | BJD13_RS18075 | Not Available | Negative | 3680198 - 3681769 | 58010.2 |
| alkaline phosphatase d family protein | BJD13_RS18080 | Not Available | Negative | 3681941 - 3683569 | 59770.8 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | BJD13_RS18085 | Not Available | Positive | 3683794 - 3684432 | 22663.6 |
| duf885 domain-containing protein | BJD13_RS18090 | Not Available | Positive | 3684742 - 3686559 | 67319.7 |
| duf2946 family protein | BJD13_RS18100 | Not Available | Positive | 3687048 - 3687431 | 13241.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
