Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nfed family protein | BJD13_RS17990 | Not Available | Negative | 3665879 - 3666116 | 8761.63 |
| family 43 glycosylhydrolase | BJD13_RS17995 | Not Available | Positive | 3666189 - 3667811 | 59809.6 |
| hypothetical protein | BJD13_RS18000 | Not Available | Negative | 3668020 - 3668223 | 7100.56 |
| peroxiredoxin family protein | BJD13_RS18005 | Not Available | Negative | 3668227 - 3668790 | 20792.3 |
| hypothetical protein | BJD13_RS24755 | Not Available | Negative | 3668861 - 3669133 | 9502.72 |
| duf4424 domain-containing protein | BJD13_RS18020 | Not Available | Positive | 3669344 - 3670252 | 33473.0 |
| response regulator transcription factor | BJD13_RS18025 | Not Available | Negative | 3670538 - 3671206 | 24159.2 |
| acetate--coa ligase | BJD13_RS18030 | Not Available | Negative | 3671493 - 3673436 | 71312.7 |
| dcap family trimeric outer membrane transporter | BJD13_RS18035 | Not Available | Positive | 3673733 - 3675115 | 50118.9 |
| duf485 domain-containing protein | BJD13_RS18040 | Not Available | Positive | 3675202 - 3675519 | 11631.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
