Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pas domain-containing hybrid sensor histidine kinase/response regulator | BJD13_RS17930 | Not Available | Positive | 3652891 - 3656343 | 126585.0 |
| manganese efflux pump mntp family protein | BJD13_RS17935 | Not Available | Negative | 3656440 - 3657024 | 19927.7 |
| iclr family transcriptional regulator | BJD13_RS17945 | Not Available | Negative | 3657463 - 3658212 | 27042.8 |
| l-fucose:h+ symporter permease | BJD13_RS17950 | Not Available | Positive | 3658393 - 3659694 | 46269.8 |
| l-fucose mutarotase | BJD13_RS17955 | Not Available | Positive | 3659697 - 3660056 | 13641.3 |
| l-fuconate dehydratase | BJD13_RS17960 | Not Available | Negative | 3660277 - 3661599 | 48140.6 |
| fumarylacetoacetate hydrolase family protein | BJD13_RS17970 | Not Available | Negative | 3662209 - 3663066 | 30705.9 |
| sdr family oxidoreductase | BJD13_RS17975 | Not Available | Negative | 3663236 - 3664006 | 26781.0 |
| amidohydrolase family protein | BJD13_RS17980 | Not Available | Negative | 3664003 - 3664875 | 31084.1 |
| aldo/keto reductase | BJD13_RS17985 | Not Available | Negative | 3664872 - 3665882 | 35141.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
