Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nfed family protein | BJD13_RS17875 | Not Available | Positive | 3639848 - 3640042 | 7382.21 |
| hypothetical protein | BJD13_RS24750 | Not Available | Negative | 3640231 - 3640554 | 11332.9 |
| hypothetical protein | BJD13_RS17880 | Not Available | Positive | 3640882 - 3641310 | 15045.3 |
| 3-dehydroquinate dehydratase | BJD13_RS17885 | Not Available | Positive | 3641321 - 3641770 | 16013.5 |
| hypothetical protein | BJD13_RS17890 | Not Available | Positive | 3641751 - 3641978 | 8322.84 |
| pqq-binding-like beta-propeller repeat protein | BJD13_RS17895 | Not Available | Negative | 3642318 - 3644048 | 60822.2 |
| gluconokinase | BJD13_RS17905 | Not Available | Negative | 3644900 - 3645484 | 20532.6 |
| mfs transporter | BJD13_RS17910 | Not Available | Positive | 3645642 - 3647024 | 50225.0 |
| gh36-type glycosyl hydrolase domain-containing protein | BJD13_RS17915 | Not Available | Positive | 3647027 - 3649426 | 88879.0 |
| nfed family protein | BJD13_RS17920 | Not Available | Negative | 3649520 - 3652163 | 96515.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
