Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat-containing sulfotransferase family protein | BJD13_RS17815 | Not Available | Positive | 3621136 - 3622725 | 57416.8 |
| tonb-dependent receptor plug domain-containing protein | BJD13_RS17825 | Not Available | Negative | 3622979 - 3625669 | 99057.7 |
| autotransporter assembly complex protein tama | BJD13_RS17830 | Not Available | Positive | 3625907 - 3627688 | 66626.9 |
| translocation/assembly module tamb domain-containing protein | BJD13_RS17835 | Not Available | Positive | 3627685 - 3631539 | 136655.0 |
| hypothetical protein | BJD13_RS17840 | Not Available | Positive | 3631644 - 3632021 | 13031.7 |
| hypothetical protein | BJD13_RS17845 | Not Available | Positive | 3632237 - 3632446 | 7447.89 |
| rhs repeat domain-containing protein | BJD13_RS17855 | Not Available | Positive | 3632578 - 3636774 | 153241.0 |
| rhs repeat domain-containing protein | BJD13_RS17860 | Not Available | Positive | 3637597 - 3638469 | 31981.7 |
| duf4279 domain-containing protein | BJD13_RS24745 | Not Available | Positive | 3638473 - 3638910 | 15583.7 |
| nfed family protein | BJD13_RS17870 | Not Available | Positive | 3639165 - 3639794 | 23855.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
