Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid-binding sylf domain-containing protein | BJD13_RS17760 | Not Available | Positive | 3601766 - 3602674 | 31726.6 |
| sec-independent protein translocase subunit tata | BJD13_RS17765 | Not Available | Positive | 3602747 - 3602974 | 8297.92 |
| sec-independent protein translocase protein tatb | BJD13_RS17770 | Not Available | Positive | 3602990 - 3603616 | 21971.0 |
| twin-arginine translocase subunit tatc | BJD13_RS17775 | Not Available | Positive | 3603613 - 3604350 | 26666.5 |
| bpss1780 family membrane protein | BJD13_RS17780 | Not Available | Negative | 3604535 - 3605434 | 31687.2 |
| glutamine amidotransferase | BJD13_RS17785 | Not Available | Negative | 3605494 - 3606246 | 27466.8 |
| type iii secretion system effector xopad | BJD13_RS17795 | Not Available | Positive | 3606716 - 3615370 | 313456.0 |
| gspe/pule family protein | BJD13_RS17800 | Not Available | Negative | 3615765 - 3617579 | 66724.7 |
| glycine--trna ligase subunit alpha | BJD13_RS17805 | Not Available | Positive | 3617669 - 3618577 | 34363.6 |
| glycine--trna ligase subunit beta | BJD13_RS17810 | Not Available | Positive | 3618896 - 3621136 | 79929.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
