Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sialate o-acetylesterase | BJD13_RS17710 | Not Available | Negative | 3588525 - 3590489 | 70871.5 |
| alpha-glucuronidase family glycosyl hydrolase | BJD13_RS17715 | Not Available | Negative | 3590486 - 3592681 | 80261.0 |
| laci family dna-binding transcriptional regulator | BJD13_RS17720 | Not Available | Positive | 3592858 - 3593931 | 38250.1 |
| xylose isomerase | BJD13_RS17725 | Not Available | Negative | 3594144 - 3595481 | 48764.1 |
| trna 2-thiocytidine(32) synthetase ttca | BJD13_RS17730 | Not Available | Positive | 3596105 - 3597022 | 33741.7 |
| recombination-associated protein rdgc | BJD13_RS17735 | Not Available | Positive | 3597086 - 3597991 | 33401.3 |
| sprt family zinc-dependent metalloprotease | BJD13_RS17740 | Not Available | Positive | 3598553 - 3599338 | 29914.3 |
| hypothetical protein | BJD13_RS17745 | Not Available | Negative | 3599468 - 3599776 | 11148.2 |
| alpha/beta fold hydrolase | BJD13_RS17750 | Not Available | Negative | 3599784 - 3600644 | 30797.5 |
| ferrochelatase | BJD13_RS17755 | Not Available | Negative | 3600647 - 3601612 | 35416.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
