Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipocalin family protein | BJD13_RS17560 | Not Available | Negative | 3549787 - 3550320 | 20154.1 |
| glycoside hydrolase family 43 protein | BJD13_RS17565 | Not Available | Negative | 3550658 - 3551692 | 37960.2 |
| mfs transporter | BJD13_RS17570 | Not Available | Negative | 3551725 - 3553212 | 54411.1 |
| tonb-dependent receptor | BJD13_RS17575 | Not Available | Negative | 3553311 - 3556244 | 105414.0 |
| mfs transporter | BJD13_RS17580 | Not Available | Positive | 3556705 - 3558018 | 47105.9 |
| endo-1,4-beta-xylanase | BJD13_RS17585 | Not Available | Positive | 3558028 - 3559020 | 36822.7 |
| hypothetical protein | BJD13_RS17590 | Not Available | Positive | 3559017 - 3559409 | 13199.3 |
| endo-1,4-beta-xylanase | BJD13_RS17595 | Not Available | Positive | 3559510 - 3560487 | 36758.4 |
| glucuronate isomerase | BJD13_RS17600 | Not Available | Positive | 3560528 - 3561946 | 52810.4 |
| beta-galactosidase galb | BJD13_RS17605 | Not Available | Positive | 3562031 - 3564802 | 101681.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
