Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gaf domain-containing protein | BJD13_RS17455 | Not Available | Negative | 3522519 - 3523763 | 45262.3 |
| thymidine kinase | BJD13_RS17460 | Not Available | Negative | 3524191 - 3524820 | 23451.2 |
| dna helicase rep | BJD13_RS17465 | Not Available | Positive | 3525026 - 3527002 | 73232.4 |
| gnat family n-acetyltransferase | BJD13_RS17470 | Not Available | Positive | 3527548 - 3528084 | 19511.5 |
| duf4272 domain-containing protein | BJD13_RS17475 | Not Available | Positive | 3528136 - 3529170 | 37711.5 |
| yceh family protein | BJD13_RS17480 | Not Available | Negative | 3529448 - 3530116 | 24081.6 |
| 5'-nucleotidase, lipoprotein e(p4) family | BJD13_RS17490 | Not Available | Positive | 3530448 - 3531407 | 34668.5 |
| orotidine-5'-phosphate decarboxylase | BJD13_RS17495 | Not Available | Positive | 3531404 - 3532135 | 25709.8 |
| tryptophan halogenase family protein | BJD13_RS17500 | Not Available | Negative | 3532545 - 3534065 | 56355.3 |
| tonb-dependent receptor domain-containing protein | BJD13_RS17505 | Not Available | Negative | 3534171 - 3537206 | 109754.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
