Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacteriophytochrome bphp | BJD13_RS17405 | Not Available | Positive | 3508400 - 3510304 | 70685.8 |
| benzoate/h(+) symporter bene family transporter | BJD13_RS17410 | Not Available | Negative | 3510379 - 3511560 | 40180.2 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 3512330 - 3513876 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 3513972 - 3514047 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 3514066 - 3514142 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 3514370 - 3517250 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 3517378 - 3517492 | Not Available |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | BJD13_RS17440 | Not Available | Positive | 3518230 - 3519045 | 29740.0 |
| duf4380 domain-containing protein | BJD13_RS17445 | Not Available | Positive | 3519741 - 3520718 | 35966.9 |
| glucan biosynthesis protein | BJD13_RS17450 | Not Available | Positive | 3520787 - 3522388 | 59791.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
