Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna 2'-phosphotransferase | BJD13_RS17305 | Not Available | Negative | 3484515 - 3485063 | 19893.8 |
| sdr family oxidoreductase | BJD13_RS17310 | Not Available | Negative | 3485222 - 3486055 | 28890.5 |
| lysr family transcriptional regulator | BJD13_RS17315 | Not Available | Positive | 3486156 - 3487058 | 32496.5 |
| ydei/ompd-associated family protein | BJD13_RS17320 | Not Available | Positive | 3487166 - 3487714 | 19065.0 |
| mfs transporter | BJD13_RS17325 | Not Available | Positive | 3487828 - 3489189 | 49127.1 |
| fusc family protein | BJD13_RS17330 | Not Available | Negative | 3489413 - 3491710 | 81653.5 |
| efflux transporter outer membrane subunit | BJD13_RS17335 | Not Available | Negative | 3491707 - 3493167 | 51427.9 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS17340 | Not Available | Negative | 3493164 - 3494087 | 33221.9 |
| duf1656 domain-containing protein | BJD13_RS17345 | Not Available | Negative | 3494084 - 3494302 | 8142.27 |
| marr family winged helix-turn-helix transcriptional regulator | BJD13_RS17350 | Not Available | Negative | 3494391 - 3494843 | 16094.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
