Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyprenyl synthetase family protein | BJD13_RS02805 | Not Available | Negative | 261604 - 262479 | 30599.6 |
| exodeoxyribonuclease vii small subunit | BJD13_RS02810 | Not Available | Negative | 262481 - 262741 | 9678.44 |
| trna lysidine(34) synthetase tils | BJD13_RS02815 | Not Available | Negative | 262773 - 264077 | 47716.2 |
| alkaline phosphatase | BJD13_RS02825 | Not Available | Negative | 264447 - 266153 | 60020.0 |
| dicarboxylate/amino acid:cation symporter | BJD13_RS02830 | Not Available | Positive | 266297 - 267637 | 46907.4 |
| class i sam-dependent methyltransferase | BJD13_RS02835 | Not Available | Positive | 267647 - 268483 | 31227.5 |
| acyl-coa thioesterase | BJD13_RS02840 | Not Available | Positive | 268728 - 269219 | 17716.4 |
| c40 family peptidase | BJD13_RS02845 | Not Available | Negative | 269419 - 270168 | 26172.3 |
| c40 family peptidase | BJD13_RS02850 | Not Available | Negative | 270278 - 270820 | 19158.1 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | BJD13_RS02855 | Not Available | Positive | 270930 - 271409 | 17342.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
