Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS17250 | Not Available | Negative | 3474649 - 3475080 | 15512.9 |
| antitoxin xre/mbca/pars toxin-binding domain-containing protein | BJD13_RS17255 | Not Available | Positive | 3475400 - 3475798 | 14551.6 |
| alpha/beta hydrolase | BJD13_RS17260 | Not Available | Negative | 3475909 - 3477528 | 58277.0 |
| xvipcd domain-containing protein | BJD13_RS17265 | Not Available | Negative | 3478222 - 3479154 | 33936.5 |
| duf6393 family protein | BJD13_RS17270 | Not Available | Negative | 3479171 - 3479608 | 15516.6 |
| hypothetical protein | BJD13_RS17275 | Not Available | Positive | 3480309 - 3480797 | 17109.5 |
| type ii toxin-antitoxin system rele/pare family toxin | BJD13_RS17280 | Not Available | Negative | 3481002 - 3482108 | 40247.1 |
| hypothetical protein | BJD13_RS17285 | Not Available | Negative | 3482095 - 3482301 | 7028.25 |
| hypothetical protein | BJD13_RS17295 | Not Available | Positive | 3482573 - 3483100 | 18480.9 |
| phospholipase d-like domain-containing protein | BJD13_RS17300 | Not Available | Negative | 3483126 - 3484391 | 47307.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
