Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1348 family protein | BJD13_RS17200 | Not Available | Positive | 3465357 - 3465833 | 18843.9 |
| type iii secretion system effector xopav | BJD13_RS25445 | Not Available | Negative | 3466005 - 3466703 | 24656.3 |
| is3 family transposase | BJD13_RS17210 | Not Available | Positive | 3467052 - 3467696 | 24962.1 |
| is3 family transposase | BJD13_RS24315 | Not Available | Positive | 3467693 - 3467908 | 8432.96 |
| hypothetical protein | BJD13_RS17220 | Not Available | Positive | 3468183 - 3468521 | 12337.7 |
| nfed family protein | BJD13_RS17225 | Not Available | Negative | 3468591 - 3469425 | 31305.6 |
| hypothetical protein | BJD13_RS17230 | Not Available | Negative | 3469889 - 3470740 | 30172.2 |
| choice-of-anchor q domain-containing protein | BJD13_RS17235 | Not Available | Negative | 3471093 - 3472643 | 52511.0 |
| pseudouridine synthase | BJD13_RS17240 | Not Available | Positive | 3473005 - 3473907 | 33630.4 |
| duf2306 domain-containing protein | BJD13_RS17245 | Not Available | Positive | 3473938 - 3474630 | 25233.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
