Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| higa family addiction module antitoxin | BJD13_RS17140 | Not Available | Positive | 3456783 - 3457073 | 10338.6 |
| type iii secretion system effector xopq | BJD13_RS17150 | Not Available | Positive | 3457422 - 3458816 | 49849.9 |
| hypothetical protein | BJD13_RS25165 | Not Available | Negative | 3458919 - 3459098 | 6793.32 |
| m61 family metallopeptidase | BJD13_RS17160 | Not Available | Negative | 3459166 - 3461091 | 70407.8 |
| Ncrna_class:other | Not Available | Not Available | Positive | 3461289 - 3461365 | Not Available |
| hypothetical protein | BJD13_RS17170 | Not Available | Negative | 3461427 - 3461759 | 12224.4 |
| hypothetical protein | BJD13_RS17180 | Not Available | Positive | 3462325 - 3462843 | 17676.9 |
| glucose 1-dehydrogenase | BJD13_RS17185 | Not Available | Negative | 3463208 - 3463951 | 25524.6 |
| tetr/acrr family transcriptional regulator | BJD13_RS17190 | Not Available | Positive | 3464035 - 3464607 | 20013.8 |
| tetr/acrr family transcriptional regulator | BJD13_RS17195 | Not Available | Positive | 3464724 - 3465293 | 21027.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
