Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf6916 family protein | BJD13_RS17090 | Not Available | Positive | 3438354 - 3438641 | 10797.0 |
| gnat family n-acetyltransferase | BJD13_RS17095 | Not Available | Negative | 3438660 - 3439217 | 20536.4 |
| phage tail protein | BJD13_RS17100 | Not Available | Negative | 3439222 - 3439758 | 18562.8 |
| phage tail protein | BJD13_RS17105 | Not Available | Negative | 3439819 - 3440346 | 18038.2 |
| phage tail protein | BJD13_RS17110 | Not Available | Negative | 3440413 - 3440958 | 18881.5 |
| putative ig domain-containing protein | BJD13_RS17115 | Not Available | Positive | 3441225 - 3446033 | 159628.0 |
| exodeoxyribonuclease v subunit gamma | BJD13_RS17120 | Not Available | Positive | 3446388 - 3449801 | 125387.0 |
| exodeoxyribonuclease v subunit beta | BJD13_RS17125 | Not Available | Positive | 3449798 - 3453850 | 144749.0 |
| aaa family atpase | BJD13_RS17130 | Not Available | Positive | 3454053 - 3456428 | 82157.7 |
| nfed family protein | BJD13_RS17135 | Not Available | Positive | 3456483 - 3456765 | 10407.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
