Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna recombination protein rmuc | BJD13_RS17040 | Not Available | Positive | 3430358 - 3431890 | 57307.0 |
| hypothetical protein | BJD13_RS17045 | Not Available | Positive | 3432082 - 3432483 | 13477.9 |
| glutathione peroxidase | BJD13_RS17050 | Not Available | Positive | 3432637 - 3433188 | 19850.5 |
| nuclear transport factor 2 family protein | BJD13_RS17055 | Not Available | Positive | 3433247 - 3433726 | 17791.8 |
| vacj family lipoprotein | BJD13_RS17060 | Not Available | Negative | 3433866 - 3434921 | 37351.9 |
| lipid asymmetry maintenance protein mlab | BJD13_RS17065 | Not Available | Negative | 3434932 - 3435222 | 9836.71 |
| phospholipid-binding protein mlac | BJD13_RS17070 | Not Available | Negative | 3435212 - 3435874 | 23457.1 |
| outer membrane lipid asymmetry maintenance protein mlad | BJD13_RS17075 | Not Available | Negative | 3435871 - 3436416 | 18651.3 |
| mlae family lipid abc transporter permease subunit | BJD13_RS17080 | Not Available | Negative | 3436428 - 3437177 | 26251.3 |
| abc transporter atp-binding protein | BJD13_RS17085 | Not Available | Negative | 3437177 - 3437971 | 27645.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
