Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diguanylate cyclase | BJD13_RS16990 | Not Available | Positive | 3415858 - 3417606 | 64650.7 |
| duf2628 domain-containing protein | BJD13_RS16995 | Not Available | Positive | 3417715 - 3418104 | 14493.8 |
| tonb-dependent receptor domain-containing protein | BJD13_RS17000 | Not Available | Positive | 3418770 - 3421703 | 107286.0 |
| gh92 family glycosyl hydrolase | BJD13_RS17005 | Not Available | Positive | 3421934 - 3424408 | 90290.4 |
| amino acid permease | BJD13_RS17010 | Not Available | Negative | 3424658 - 3426073 | 49188.1 |
| hypothetical protein | BJD13_RS17015 | Not Available | Negative | 3426289 - 3426669 | 14015.3 |
| glutathione s-transferase family protein | BJD13_RS17020 | Not Available | Negative | 3426789 - 3427409 | 22605.1 |
| hypothetical protein | BJD13_RS17025 | Not Available | Negative | 3427571 - 3427801 | 8107.45 |
| lysr family transcriptional regulator | BJD13_RS17030 | Not Available | Negative | 3428138 - 3429070 | 34260.4 |
| zinc-binding alcohol dehydrogenase family protein | BJD13_RS17035 | Not Available | Positive | 3429166 - 3430173 | 35966.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
