Xanthomonas perforans strain LH3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas perforans strain LH3 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its mobility. This strain is known to possess a single replicon, indicating a streamlined genomic structure that can impact its adaptability and replication efficiency. Xanthomonas perforans is particularly significant due to its pathogenicity in key agricultural crops. It is a known causative agent of bacterial spot disease in tomato plants (Solanum lycopersicum), which can lead to substantial yield losses. Additionally, this strain has been associated with Arabidopsis thaliana, a model organism in plant biology, suggesting its utility in studies related to plant-microbe interactions. The accession number for this strain is NZ_CP018475.1, which provides a reference point for researchers interested in genomic studies or comparative analyses within the Xanthomonas genus. From an ecological perspective, the presence of Xanthomonas perforans in important crops like tomato highlights the potential impact of bacterial pathogens on agricultural ecosystems. The interactions between this bacterium and its host plants can influence plant health, agricultural practices, and food security. Understanding the biology and behavior of Xanthomonas perforans is crucial for developing effective management strategies to mitigate the effects of bacterial spot disease in tomato and potentially other hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas perforans
Strainstrain LH3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas perforans strain LH3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum, Arabidopsis thaliana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas perforans strain LH3 chromosome, complete genome.

Gene Summary

Adenine Count

872906 bp

Thymine Count

873101 bp

Guanine Count

1612744 bp

Cytosine Count

1611142 bp

Genome Length

4969893 bp

Protein-coding Genes

4115 genes

Non-Coding Genes

146 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate cyclaseBJD13_RS16990Not AvailablePositive3415858 - 341760664650.7
duf2628 domain-containing proteinBJD13_RS16995Not AvailablePositive3417715 - 341810414493.8
tonb-dependent receptor domain-containing proteinBJD13_RS17000Not AvailablePositive3418770 - 3421703107286.0
gh92 family glycosyl hydrolaseBJD13_RS17005Not AvailablePositive3421934 - 342440890290.4
amino acid permeaseBJD13_RS17010Not AvailableNegative3424658 - 342607349188.1
hypothetical proteinBJD13_RS17015Not AvailableNegative3426289 - 342666914015.3
glutathione s-transferase family proteinBJD13_RS17020Not AvailableNegative3426789 - 342740922605.1
hypothetical proteinBJD13_RS17025Not AvailableNegative3427571 - 34278018107.45
lysr family transcriptional regulatorBJD13_RS17030Not AvailableNegative3428138 - 342907034260.4
zinc-binding alcohol dehydrogenase family proteinBJD13_RS17035Not AvailablePositive3429166 - 343017335966.3

Displaying genes 3031 – 3040 of 4261 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial spot of tomatoCausesPMC6946519
Bacterial spot of tomatoCausesPMC12211302
Pith necrosisCausesPMC12847849
Bacterial spotCausesPMC8597037
Bacterial spot of tomatoCausesPMC8597037

Displaying health effects 1 – 5 of 5 in total