Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase (atp-hydrolyzing) subunit b | BJD13_RS16880 | Not Available | Negative | 3386224 - 3388668 | 89688.9 |
| dna replication/repair protein recf | BJD13_RS16885 | Not Available | Negative | 3388783 - 3389889 | 40687.4 |
| dna polymerase iii subunit beta | BJD13_RS16890 | Not Available | Negative | 3390942 - 3392042 | 40754.9 |
| chromosomal replication initiator protein dnaa | BJD13_RS16895 | Not Available | Negative | 3392319 - 3393647 | 49491.4 |
| 50s ribosomal protein l34 | BJD13_RS16905 | Not Available | Positive | 3393890 - 3394030 | 5310.58 |
| ribonuclease p protein component | BJD13_RS16910 | Not Available | Positive | 3394069 - 3394506 | 16028.5 |
| membrane protein insertase yidc | BJD13_RS16915 | Not Available | Positive | 3394532 - 3396256 | 63282.9 |
| polysaccharide deacetylase family protein | BJD13_RS16920 | Not Available | Positive | 3396342 - 3399044 | 97368.9 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | BJD13_RS16925 | Not Available | Positive | 3399201 - 3400541 | 47299.3 |
| acid phosphatase | BJD13_RS16930 | Not Available | Negative | 3400705 - 3401562 | 30043.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
