Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS16830 | Not Available | Positive | 3378345 - 3378614 | 9944.33 |
| pyridoxine 5'-phosphate synthase | BJD13_RS16835 | Not Available | Positive | 3378622 - 3379389 | 26492.3 |
| exbd/tolr family protein | BJD13_RS16840 | Not Available | Negative | 3379668 - 3380048 | 13471.4 |
| exbd/tolr family protein | BJD13_RS16845 | Not Available | Negative | 3380300 - 3380713 | 15081.4 |
| exbd/tolr family protein | BJD13_RS16850 | Not Available | Negative | 3380717 - 3381139 | 15185.5 |
| tonb-system energizer exbb | BJD13_RS16855 | Not Available | Negative | 3381186 - 3381947 | 26697.9 |
| energy transducer tonb | BJD13_RS16860 | Not Available | Negative | 3382033 - 3382590 | 19361.3 |
| tetratricopeptide repeat protein | BJD13_RS16865 | Not Available | Negative | 3382858 - 3384051 | 43449.5 |
| m48 family metallopeptidase | BJD13_RS16870 | Not Available | Negative | 3384329 - 3385135 | 28487.0 |
| cpbp family intramembrane glutamic endopeptidase | BJD13_RS16875 | Not Available | Negative | 3385319 - 3386155 | 29265.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
