Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s41 family peptidase | BJD13_RS16780 | Not Available | Positive | 3367476 - 3369005 | 52792.3 |
| nfed family protein | BJD13_RS16785 | Not Available | Negative | 3369172 - 3370162 | 34628.6 |
| duf1820 family protein | BJD13_RS16790 | Not Available | Negative | 3370162 - 3370482 | 12083.5 |
| rhomboid family intramembrane serine protease | BJD13_RS16795 | Not Available | Negative | 3370591 - 3371283 | 25050.3 |
| outer membrane protein transport protein | BJD13_RS16800 | Not Available | Positive | 3371502 - 3372842 | 47304.8 |
| 2og-fe(ii) oxygenase | BJD13_RS16805 | Not Available | Positive | 3373116 - 3373817 | 26398.3 |
| pa0069 family radical sam protein | BJD13_RS16810 | Not Available | Positive | 3374018 - 3375145 | 41564.0 |
| duf1330 domain-containing protein | BJD13_RS16815 | Not Available | Negative | 3375263 - 3375628 | 13344.1 |
| helix-turn-helix transcriptional regulator | BJD13_RS16820 | Not Available | Negative | 3375678 - 3376403 | 27020.4 |
| cardiolipin synthase | BJD13_RS16825 | Not Available | Positive | 3376809 - 3378269 | 54387.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
