Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| simpl domain-containing protein | BJD13_RS02755 | Not Available | Negative | 247497 - 248231 | 25615.7 |
| maf-like protein | BJD13_RS02760 | Not Available | Positive | 248370 - 248942 | 20397.5 |
| ribonuclease g | BJD13_RS02765 | Not Available | Positive | 248942 - 250441 | 55776.2 |
| yhdp family protein | BJD13_RS02770 | Not Available | Positive | 250611 - 254531 | 138701.0 |
| duf6065 family protein | BJD13_RS02775 | Not Available | Negative | 254547 - 255299 | 27893.0 |
| metalloprotease tldd | BJD13_RS02780 | Not Available | Positive | 255398 - 256843 | 50736.3 |
| ribosome biogenesis factor yjga | BJD13_RS02785 | Not Available | Negative | 257100 - 257681 | 22029.9 |
| metalloprotease pmba | BJD13_RS02790 | Not Available | Positive | 257829 - 259196 | 47899.3 |
| duf4870 domain-containing protein | BJD13_RS02795 | Not Available | Positive | 259523 - 259984 | 16679.4 |
| m35 family metallo-endopeptidase | BJD13_RS02800 | Not Available | Negative | 260054 - 261142 | 38213.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
