Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent oxidoreductase | BJD13_RS16725 | Not Available | Positive | 3353856 - 3355337 | 52665.8 |
| hypothetical protein | BJD13_RS16730 | Not Available | Positive | 3355800 - 3356201 | 15114.0 |
| nad(p)-dependent alcohol dehydrogenase | BJD13_RS16735 | Not Available | Negative | 3356286 - 3357344 | 37768.2 |
| glycoside hydrolase family 5 protein | BJD13_RS16745 | Not Available | Positive | 3357655 - 3358728 | 39368.9 |
| glycoside hydrolase family 5 protein | BJD13_RS16750 | Not Available | Positive | 3359496 - 3360548 | 38581.1 |
| glycoside hydrolase family 5 protein | BJD13_RS16755 | Not Available | Positive | 3361178 - 3362311 | 40844.2 |
| pepsy domain-containing protein | BJD13_RS16760 | Not Available | Positive | 3362604 - 3363047 | 15702.4 |
| m28 family metallopeptidase | BJD13_RS16765 | Not Available | Negative | 3363361 - 3365157 | 63937.7 |
| hypothetical protein | BJD13_RS16770 | Not Available | Negative | 3365319 - 3365975 | 22214.3 |
| murein hydrolase activator envc family protein | BJD13_RS16775 | Not Available | Positive | 3366073 - 3367371 | 46432.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
