Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ncrna_class:other | Not Available | Not Available | Positive | 3339347 - 3339423 | Not Available |
| m56 family metallopeptidase | BJD13_RS16680 | Not Available | Negative | 3339744 - 3341483 | 61587.9 |
| blai/meci/copy family transcriptional regulator | BJD13_RS16685 | Not Available | Negative | 3341487 - 3341885 | 14592.4 |
| lysr family transcriptional regulator | BJD13_RS16690 | Not Available | Negative | 3342077 - 3342952 | 31398.3 |
| nmra family nad(p)-binding protein | BJD13_RS16695 | Not Available | Positive | 3343117 - 3343986 | 30825.4 |
| penicillin acylase family protein | BJD13_RS16700 | Not Available | Negative | 3344065 - 3346464 | 87409.1 |
| hypothetical protein | BJD13_RS16705 | Not Available | Positive | 3346713 - 3347057 | 11417.4 |
| dna topoisomerase ib | BJD13_RS16710 | Not Available | Negative | 3347273 - 3348550 | 46539.8 |
| i78 family peptidase inhibitor | BJD13_RS16715 | Not Available | Positive | 3348607 - 3348987 | 13063.6 |
| glutamate synthase large subunit | BJD13_RS16720 | Not Available | Positive | 3349190 - 3353662 | 162946.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
