Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system prevent-host-death family antitoxin | BJD13_RS16620 | Not Available | Negative | 3324036 - 3324293 | 9686.79 |
| paqr family membrane homeostasis protein trha | BJD13_RS16625 | Not Available | Negative | 3324359 - 3325021 | 23915.0 |
| dead/deah box helicase | BJD13_RS16630 | Not Available | Positive | 3325199 - 3327694 | 90741.7 |
| ribonuclease h-like domain-containing protein | BJD13_RS16635 | Not Available | Positive | 3327691 - 3329148 | 52118.1 |
| type iii secretion system effector avirulence protein avrbs2 | BJD13_RS16645 | Not Available | Negative | 3329638 - 3331827 | 80289.5 |
| rok family protein | BJD13_RS16650 | Not Available | Negative | 3331970 - 3333127 | 40947.9 |
| tonb-dependent receptor | BJD13_RS16655 | Not Available | Positive | 3333230 - 3335887 | 96803.6 |
| duf1868 domain-containing protein | BJD13_RS16660 | Not Available | Positive | 3335898 - 3336683 | 29104.8 |
| saccharopine dehydrogenase family protein | BJD13_RS16665 | Not Available | Negative | 3336822 - 3338003 | 42050.0 |
| hypothetical protein | BJD13_RS24305 | Not Available | Negative | 3338040 - 3338606 | 20144.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
