Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xvipcd domain-containing protein | BJD13_RS24740 | Not Available | Positive | 3315372 - 3317204 | 66514.5 |
| xac0095 family protein | BJD13_RS16565 | Not Available | Positive | 3317604 - 3317825 | 8296.95 |
| hypothetical protein | BJD13_RS16570 | Not Available | Positive | 3317950 - 3318399 | 16029.2 |
| nad(p)h-dependent oxidoreductase | BJD13_RS16585 | Not Available | Positive | 3319075 - 3319683 | 21914.1 |
| hypothetical protein | BJD13_RS16590 | Not Available | Negative | 3319921 - 3320631 | 24776.2 |
| lysr family transcriptional regulator | BJD13_RS16595 | Not Available | Negative | 3320831 - 3321742 | 33870.2 |
| sdr family oxidoreductase | BJD13_RS16600 | Not Available | Positive | 3321868 - 3322605 | 25272.3 |
| sdr family nad(p)-dependent oxidoreductase | BJD13_RS16605 | Not Available | Positive | 3322665 - 3323564 | 31258.1 |
| Ncrna_class:other | Not Available | Not Available | Positive | 3323607 - 3323682 | Not Available |
| type ii toxin-antitoxin system rele/pare family toxin | BJD13_RS16615 | Not Available | Negative | 3323746 - 3324048 | 11523.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
