Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf58 domain-containing protein | BJD13_RS16450 | Not Available | Positive | 3291034 - 3291933 | 32546.7 |
| bata domain-containing protein | BJD13_RS16455 | Not Available | Positive | 3291977 - 3293176 | 42699.1 |
| hypothetical protein | BJD13_RS16460 | Not Available | Positive | 3293173 - 3295452 | 82219.3 |
| carboxypeptidase-like regulatory domain-containing protein | BJD13_RS16465 | Not Available | Positive | 3295610 - 3297391 | 62067.3 |
| duf938 domain-containing protein | BJD13_RS16470 | Not Available | Negative | 3297651 - 3298307 | 23576.2 |
| ecsc family protein | BJD13_RS16475 | Not Available | Negative | 3298503 - 3299297 | 27440.2 |
| srpbcc family protein | BJD13_RS16480 | Not Available | Positive | 3299468 - 3299941 | 17945.2 |
| glycine betaine/l-proline transporter prop | BJD13_RS16485 | Not Available | Negative | 3300284 - 3301774 | 53408.4 |
| thioredoxin family protein | BJD13_RS16495 | Not Available | Negative | 3302307 - 3302636 | 12196.7 |
| host attachment family protein | BJD13_RS16500 | Not Available | Negative | 3302657 - 3303055 | 14473.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
