Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fmn-dependent l-lactate dehydrogenase lldd | BJD13_RS16345 | Not Available | Positive | 3269828 - 3270994 | 41917.7 |
| ku protein | BJD13_RS16350 | Not Available | Negative | 3271132 - 3272091 | 35615.8 |
| hypothetical protein | BJD13_RS16355 | Not Available | Negative | 3272091 - 3272489 | 15112.7 |
| hypothetical protein | BJD13_RS16360 | Not Available | Positive | 3272640 - 3272819 | 6296.02 |
| duf779 domain-containing protein | BJD13_RS16365 | Not Available | Negative | 3272922 - 3273317 | 14366.1 |
| aldehyde dehydrogenase | BJD13_RS16370 | Not Available | Negative | 3273494 - 3275023 | 55559.5 |
| hypothetical protein | BJD13_RS16375 | Not Available | Negative | 3275410 - 3275928 | 18665.3 |
| hypothetical protein | BJD13_RS16380 | Not Available | Negative | 3276123 - 3276419 | 10345.2 |
| tonb-dependent receptor family protein | BJD13_RS16385 | Not Available | Negative | 3276529 - 3278667 | 77273.8 |
| aromatic amino acid transaminase | BJD13_RS16390 | Not Available | Positive | 3278824 - 3280026 | 43144.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
