Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enoyl-acp reductase fabv | BJD13_RS16295 | Not Available | Negative | 3257867 - 3259075 | 43775.0 |
| winged helix-turn-helix domain-containing protein | BJD13_RS16300 | Not Available | Positive | 3259353 - 3262700 | 121756.0 |
| hypothetical protein | BJD13_RS16305 | Not Available | Positive | 3262697 - 3263095 | 14340.0 |
| hypothetical protein | BJD13_RS16310 | Not Available | Negative | 3263217 - 3263765 | 19892.7 |
| hypothetical protein | BJD13_RS16315 | Not Available | Negative | 3264055 - 3264453 | 14300.0 |
| response regulator transcription factor | BJD13_RS16320 | Not Available | Negative | 3265053 - 3265685 | 23061.8 |
| sensor histidine kinase | BJD13_RS16325 | Not Available | Negative | 3265682 - 3266881 | 43400.1 |
| methyltransferase family protein | BJD13_RS16330 | Not Available | Positive | 3266942 - 3267508 | 20888.8 |
| duf2141 domain-containing protein | BJD13_RS16335 | Not Available | Positive | 3267726 - 3268148 | 14941.1 |
| nfed family protein | BJD13_RS16340 | Not Available | Positive | 3268175 - 3269688 | 55613.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
