Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| syme family type i addiction module toxin | BJD13_RS16245 | Not Available | Negative | 3241847 - 3242236 | 14640.5 |
| 3'-5' exonuclease | BJD13_RS16250 | Not Available | Positive | 3242894 - 3243445 | 20606.5 |
| thif family adenylyltransferase | BJD13_RS16260 | Not Available | Negative | 3243930 - 3245444 | 54932.8 |
| nucleotidyltransferase | BJD13_RS16265 | Not Available | Negative | 3245686 - 3246945 | 46360.6 |
| saved domain-containing protein | BJD13_RS16270 | Not Available | Negative | 3246942 - 3247967 | 37621.6 |
| hypothetical protein | BJD13_RS24730 | Not Available | Negative | 3248209 - 3248565 | 13193.9 |
| lamg-like jellyroll fold domain-containing protein | BJD13_RS16275 | Not Available | Negative | 3248912 - 3252778 | 142879.0 |
| tonb-dependent receptor | BJD13_RS16280 | Not Available | Negative | 3253143 - 3255923 | 100400.0 |
| sugar kinase | BJD13_RS16285 | Not Available | Positive | 3256209 - 3257231 | 36372.4 |
| hypothetical protein | BJD13_RS16290 | Not Available | Negative | 3257414 - 3257701 | 10288.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
